Monarch
Join Login

Papers that influence us.

Changing an insect’s decision to land requires an array of disciplines. These papers connect machine learning, insect neuroscience, chemical ecology, and the experiments that turn careful observation into behavioral data.

12 papers · 4 fields

Machine learning

  1. Chithrananda, Grand & Ramsundar · 2020 · arXiv preprint

    ChemBERTa: Large-Scale Self-Supervised Pretraining for Molecular Property Prediction

    A model can learn from chemical structures before it learns a specific prediction task. ChemBERTa explores this approach on molecular properties. The question for our work is whether that knowledge, combined with behavioral data, can help us make better predictions about compounds we have never tested.

  2. Chepurwar et al. · 2019 · Chemical Senses

    Sequence-Based Prediction of Olfactory Receptor Responses

    Uses similarities between receptor sequences to predict responses to odors, including in flies and mosquitoes. This is a computational baseline for narrowing the search and choosing experiments. Predicting a receptor’s response is one step; understanding what the living animal does requires another.

Insect neuroscience

  1. Tumkaya et al. · 2022 · eLife

    Most primary olfactory neurons have individually neutral effects on behavior

    In controlled fruit-fly experiments, activating most individual olfactory neuron classes did not produce attraction or avoidance. Responses to pairs were also difficult to predict from their parts. It points us toward interactions between sensory signals, and back to experiments that measure the animal’s behavior.

  2. Task et al. · 2022 · eLife

    Chemoreceptor co-expression in Drosophila melanogaster olfactory neurons

    Maps overlapping chemoreceptor expression within fruit-fly olfactory neurons, with evidence of co-expression in Anopheles mosquitoes. Understanding which receptors share a neuron gives us a better starting point for testing how a compound becomes a neural signal.

  3. Liu, Zhang et al. · 2020 · Current Biology

    The Molecular Basis of Host Selection in a Crucifer-Specialized Moth

    In diamondback moths, Or35 and Or49 respond to odors from cruciferous plants. Disrupting both receptors removed the tested odor preference for egg laying. The study connects compound, receptor, and behavior in one experimental chain, a model for understanding how an insect chooses a crop.

Chemical ecology

Behavior & measurement

  1. Steck et al. · 2012 · Scientific Reports

    A high-throughput behavioral paradigm for Drosophila olfaction - The Flywalk

    Joins controlled odor delivery with automated tracking of individual walking flies. Concentration, timing, movement, and response latency become part of the same measurement. It offers a way to separate a chemical’s effect from variation in exposure and the animal’s baseline activity.

  2. Geissmann et al. · 2017 · PLOS Biology

    Ethoscopes: An open platform for high-throughput ethomics

    Brings together open hardware, video tracking, and software for scalable behavioral experiments. The lesson for our work is to design measurement and analysis together, so that running more experiments produces comparable records of individual behavior.